When a loan is copied or an existing entity is brought over to a new loan,  the government financing will flow through with each of the entities.  If you do not want the government financing records to reflect within the copied loan, the following steps should be taken to remove the records.  This will not impact your previous loan.

Within the Loan Analysis > Financial Analysis menu:
1. Add the Entity to the Financial Analysis area; 
2  Click on the hyperlinked entity name and go to the Debt Schedule tab;

2.  Remove the debt record in question by clicking the X; 
3.  Delete the financial record